Package: paleobuddy 1.0.0.9000

paleobuddy: Simulating Diversification Dynamics

Simulation of species diversification, fossil records, and phylogenies. While the literature on species birth-death simulators is extensive, including important software like 'paleotree' and 'APE', we concluded there were interesting gaps to be filled regarding possible diversification scenarios. Here we strove for flexibility over focus, implementing a large array of regimens for users to experiment with and combine. In this way, 'paleobuddy' can be used in complement to other simulators as a flexible jack of all trades, or, in the case of scenarios implemented only here, can allow for robust and easy simulations for novel situations. Environmental data modified from that in 'RPANDA': Morlon H. et al (2016) <doi:10.1111/2041-210X.12526>.

Authors:Bruno do Rosario Petrucci [aut, cre], Matheus Januario [aut], Tiago Quental [aut]

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NEWS

Peer review:

Bug tracker:https://github.com/brpetrucci/paleobuddy/issues

On CRAN:

evolutionmacroevolutionpaleobiologypaleontologyphylogenetics

12 exports 5 stars 1.18 score 0 dependencies 3 scripts 209 downloads

Last updated 1 years agofrom:c39f39abbc. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:bd.simbinnerdraw.simfind.lineagesis.simmake.phylomake.ratephylo.to.simrexp.varsample.cladesim.countsvar.rate.div

Dependencies: